GTAGTTCATA GTTATTAAAC TAATAAAAGT TTTAGCTATT ATATTGTGTT TACCTGAGAT AAATCCAAGG GAACTTTTGA CTAAACAAAA ATACAAATGT CATTGATTCT GCTCATATCC ACTGAATACA ACCTGCCTTC TATTTTAAAG AAAGCTTTTT TTTTAAATGT GTTAAGTTTT AAGGCCCTCT AAAACCATTT Y TGAAGTGTTT ATTCTGACTT TAAAATTCTG TAAGGATACA CTTTTTACTT ATGTTAAAAC TGTACCATTT ACTTGGTGCT ATTAAAACAA TGTTTGCTAT TTTGATATAG TGTGTTATTA ACAACTTTTT TTTTTTAATA TTTATTTATT TATTATATGT AAGTACACTG TAGCTGTCTT CAGACACACC AGAAGAGGGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46775582 | NES10752401 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | T | C | C | T | C | T | T | C | C | T | T | C | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33130383 | SNP | C | T | T | C | C | T | C | T | T | C | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46775582 | NES10752401 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:95495067 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm40097 | predicted gene, 40097 | within coordinates | ||||||
Gm42671 | predicted gene 42671 | 1215 bp upstream | ||||||
Golph3l | golgi phosphoprotein 3-like | 1213 bp upstream | ||||||
Hormad1 | HORMA domain containing 1 | mRNA-UTR | ||||||
Rr397841 | regulatory region 397841 | 837 bp upstream | ||||||
Rr580975 | regulatory region 580975 | 185 bp proximal | ||||||
Rr580976 | regulatory region 580976 | 503 bp proximal | ||||||
Rr580977 | regulatory region 580977 | 1046 bp proximal | ||||||
Rr580978 | regulatory region 580978 | 1052 bp proximal | ||||||
Rr580979 | regulatory region 580979 | 1245 bp proximal | ||||||
Tssr30603 | transcription start site region 30603 | 1172 bp upstream | ||||||
Tssr30604 | transcription start site region 30604 | 1204 bp upstream | ||||||
Tssr30605 | transcription start site region 30605 | 1235 bp upstream | ||||||
Tssr30606 | transcription start site region 30606 | 1279 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 03/18/2025 MGI 6.24 |
![]() |
|