rs33130381 SNP Detail

Summary

• ID
  rs33130381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95495031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGTGTG CCTTCTGTAC
  CTCTGAAAAT TATTTTGTAG TTCATAGTTA TTAAACTAAT AAAAGTTTTA GCTATTATAT
  TGTGTTTACC TGAGATAAAT CCAAGGGAAC TTTTGACTAA ACAAAAATAC AAATGTCATT
  GATTCTGCTC ATATCCACTG AATACAACCT GCCTTCTATT TTAAAGAAAG CTTTTTTTTT
  W
  AATGTGTTAA GTTTTAAGGC CCTCTAAAAC CATTTTTGAA GTGTTTATTC TGACTTTAAA
  ATTCTGTAAG GATACACTTT TTACTTATGT TAAAACTGTA CCATTTACTT GGTGCTATTA
  AAACAATGTT TGCTATTTTG ATATAGTGTG TTATTAACAA CTTTTTTTTT TTAATATTTA
  TTTATTTATT ATATGTAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775579	NES10752399	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T	A	T	A	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33130381					SNP	T	A	A	T	T	A	T	A	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775579	NES10752399	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95495031 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	1251 bp upstream
Golph3l	golgi phosphoprotein 3-like	1249 bp upstream
Hormad1	HORMA domain containing 1	mRNA-UTR
Rr397841	regulatory region 397841	873 bp upstream
Rr580975	regulatory region 580975	221 bp proximal
Rr580976	regulatory region 580976	539 bp proximal
Rr580977	regulatory region 580977	1082 bp proximal
Rr580978	regulatory region 580978	1088 bp proximal
Rr580979	regulatory region 580979	1281 bp proximal
Tssr30603	transcription start site region 30603	1208 bp upstream
Tssr30604	transcription start site region 30604	1240 bp upstream
Tssr30605	transcription start site region 30605	1271 bp upstream
Tssr30606	transcription start site region 30606	1315 bp upstream