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rs33130381 SNP Detail
Summary
  • ID
    rs33130381
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:95495031 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAAGGTGTG CCTTCTGTAC
    CTCTGAAAAT TATTTTGTAG TTCATAGTTA TTAAACTAAT AAAAGTTTTA GCTATTATAT
    TGTGTTTACC TGAGATAAAT CCAAGGGAAC TTTTGACTAA ACAAAAATAC AAATGTCATT
    GATTCTGCTC ATATCCACTG AATACAACCT GCCTTCTATT TTAAAGAAAG CTTTTTTTTT
    W
    AATGTGTTAA GTTTTAAGGC CCTCTAAAAC CATTTTTGAA GTGTTTATTC TGACTTTAAA
    ATTCTGTAAG GATACACTTT TTACTTATGT TAAAACTGTA CCATTTACTT GGTGCTATTA
    AAACAATGTT TGCTATTTTG ATATAGTGTG TTATTAACAA CTTTTTTTTT TTAATATTTA
    TTTATTTATT ATATGTAAGT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46775579 NES10752399 PERLEGEN MM_PANEL2 f SNP T A A T T A T A T T A A T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33130381 SNP T A A T T A T A T T A A T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46775579 NES10752399 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95495031 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40097 predicted gene, 40097 within coordinates
Gm42671 predicted gene 42671 1251 bp upstream
Golph3l golgi phosphoprotein 3-like 1249 bp upstream
Hormad1 HORMA domain containing 1 mRNA-UTR
Rr397841 regulatory region 397841 873 bp upstream
Rr580975 regulatory region 580975 221 bp proximal
Rr580976 regulatory region 580976 539 bp proximal
Rr580977 regulatory region 580977 1082 bp proximal
Rr580978 regulatory region 580978 1088 bp proximal
Rr580979 regulatory region 580979 1281 bp proximal
Tssr30603 transcription start site region 30603 1208 bp upstream
Tssr30604 transcription start site region 30604 1240 bp upstream
Tssr30605 transcription start site region 30605 1271 bp upstream
Tssr30606 transcription start site region 30606 1315 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory