rs33129609 SNP Detail

Summary

• ID
  rs33129609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95433231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGCTGG CCTGAGACTA
  GCACTATACC TGGCCAGATG TTCTATTTCA GCATTTTAAA TTTTCAGTAA AAAAAAAAAA
  TCAGTATAAG CAAAGTAAAA ACAAACAAAC AAACAAAGAA AAAAACCAAT GGAGAACTGT
  GAGAAGGCAG GCGGAGTGTA CGGCACCACC AGAGACTGCT AGCCAGAACA GTAAAAACAG
  R
  CCCTGCAGAT CACCAAGAAA ACCGATAAAT ACACTAGAAA CATGAGCAAA ATAATTGAAA
  ATGCAATCCT CAGAAAACTC AGTGGTCAAA AACATGGGAG AGATGCCCAT TTTCATTGGT
  GATTAATAAA GATTCAGGTT TAAAAACCAA TAGTTCATTT TACCCCAGCT GTGCCTAGAA
  GACCACAGTG GCAGTTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775195	NES10756305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33129609					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775195	NES10756305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95433231 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	866 bp upstream
Gm40096	predicted gene, 40096	1421 bp upstream
Gm56808	predicted gene, 56808	1035 bp upstream
Rr397840	regulatory region 397840	682 bp upstream
Rr580964	regulatory region 580964	1815 bp distal
Rr580965	regulatory region 580965	1046 bp distal
Rr580966	regulatory region 580966	838 bp distal
Rr580967	regulatory region 580967	585 bp proximal
Rr580968	regulatory region 580968	877 bp proximal
Tssr30563	transcription start site region 30563	857 bp upstream
Tssr30564	transcription start site region 30564	880 bp upstream
Tssr30565	transcription start site region 30565	899 bp upstream
Tssr30566	transcription start site region 30566	958 bp upstream
Tssr34486	transcription start site region 34486	1081 bp upstream
Tssr34487	transcription start site region 34487	1025 bp upstream