rs33129527 SNP Detail

Summary

• ID
  rs33129527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24714064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGTTTGC CTGTCTTCTG TCCCTACCGG TCCGCAGCCT
  TCTCTCTGTC AGGAGCATCC TGCTCCTTGA GATCAAACGC CGGCTCCTTC CTCCACGCCC
  R
  AGACTGGCTC TTCTTCCTCC ATCCTCTTGG ACTTAAGATG CTTCTTGGAC TCCTTTGCTG
  CCACAGCATG TGACATAAAT GTTAGTCACT TTATTTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45740876	mCV22685943	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148095111	ENSMUSSNP4623332	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33129527					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24714064 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	455 bp distal
Rr608341	regulatory region 608341	1678 bp proximal
Rr608342	regulatory region 608342	1751 bp proximal
Rr608343	regulatory region 608343	1931 bp proximal