rs33127684 SNP Detail

Summary

• ID
  rs33127684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155155588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGAATG GCGCATGTTG
  GGTGCACATA TCAGGCTACA CTTACTGTCT TAATTTATAC ATTCAGAATG CTAGTACATG
  TGTACACACC ACTGAACCGT TTCCAGGACA GGTGCCCAGA ACATACCGCT TCAGTAAGCA
  GCCGGGCCCT GGCTGGCATG TCCAGCCAGT CAGCTACTTT TACTGTCCTG GCCAGAAGCC
  Y
  AGGCTGCAAG TGAAAGGGAA TTTTATGTGG CTGTGCCCTG CTATTAAGAG GCTGGTGTCC
  TGGGCCGCAG TACAGAAAAC ATAAGCATTT ACTTTGCTAA GTCAGCAGTC TGCATAGTGG
  GCACTGTGTA CCAGCTGTCT AAGTGTGGAA TGTGTACCCT GCTTTCTCAT AGATGGCAGA
  GCAAGCCTTT TCTCTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46775398	NES10983653	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33127684					SNP	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775398	NES10983653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155155588 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex10	peroxisomal biogenesis factor 10			Intron
				Noncoding-Transcript-Variant
Rr606360	regulatory region 606360			1477 bp distal
Rr606361	regulatory region 606361			within coordinates