rs33127236 SNP Detail

Summary

• ID
  rs33127236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155196862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAGAATTA AAGGCATGAG CCACCACTGT CTGGACTCTT
  TGGGGCGCTT AACAGGAGTG AGAAGGTCCT GTAAGAGGGT GCCTTCCAGG CAAAATCACA
  S
  CTTGTGTTTA GGACCCTTTG TGGACTCTGA CTCAGGATGG ACAGCCAGGA GCCCCAGTCC
  CCGGCACTGG GATCCTCGCT CTGGCTCTCA GGCAGAGTGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss46775725	NES10981736	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs33127236					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775725	NES10981736	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155196862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Morn1	MORN repeat containing 1			Intron
				Noncoding-Transcript-Variant
Rr606376	regulatory region 606376			1561 bp proximal
Tssr1397	transcription start site region 1397			1113 bp downstream