rs33126810 SNP Detail

Summary

• ID
  rs33126810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95409209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACCAGG TGCCTTCTGT
  AGTGTGTGCT TGTGTGTGTA TGTGTGTGTG TGTGTGTGTG TGCGTGCTCA CGTGCGTGCG
  CGCACGCATC TGTGGTAATC TGACTGTGGT ATAGTTCATG CTACAAGAAT ATAGCATATT
  GTTACTTAAT TCATTACCTA TTTTGTATAT TTAGGATTTT TTTCTACTTT AAAATTTTTA
  Y
  GCTAAGCTGT GGGCTGAAGA TTCAAGATCT AAGGTGCTGC CTTGATCCTC AAGAAATTCT
  CATTCTTAAA AATTAGAAAA ATCTCAGAAA GAGAAAATTC TGCAATCAGG AAAGTAAATC
  CTAATAGTAG CTGACACTTT CTGAGAGATT GCTGTGCATC AATAGTGTCT CTGATTCTCG
  CGTGAGTGAG ATCTCTCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774898	NES10757687	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33126810					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774898	NES10757687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95409209 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	within coordinates
Rr580954	regulatory region 580954	1518 bp distal
Tssr30562	transcription start site region 30562	625 bp upstream