rs33126807 SNP Detail

Summary

• ID
  rs33126807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95409123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGACAC TCTCTATACC
  CCAGAGTGGG AAGGCAGGGT CCCAGACTCC ATCGACTATC GAAAGAAAGG ATACGTTACT
  CCAGTCAAGA ACCAGGTGCC TTCTGTAGTG TGTGCTTGTG TGTGTATGTG TGTGTGTGTG
  TGTGTGTGCG TGCTCACGTG CGTGCGCGCA CGCATCTGTG GTAATCTGAC TGTGGTATAG
  Y
  TCATGCTACA AGAATATAGC ATATTGTTAC TTAATTCATT ACCTATTTTG TATATTTAGG
  ATTTTTTTCT ACTTTAAAAT TTTTACGCTA AGCTGTGGGC TGAAGATTCA AGATCTAAGG
  TGCTGCCTTG ATCCTCAAGA AATTCTCATT CTTAAAAATT AGAAAAATCT CAGAAAGAGA
  AAATTCTGCA ATCAGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774895	NES10757686	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33126807					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774895	NES10757686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95409123 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	24 bp upstream
Rr580954	regulatory region 580954	1432 bp distal
Tssr30560	transcription start site region 30560	1944 bp downstream
Tssr30561	transcription start site region 30561	1916 bp downstream
Tssr30562	transcription start site region 30562	711 bp upstream