rs33126804 SNP Detail

Summary

• ID
  rs33126804
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95409008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTGTCT TTACCCTGGT
  CCCTGCTAAT GCTTGGCATC CTTTCTTGTC TCAGACCAGT GAAGAAGTGG TTCAGAAGAT
  GACGGGACTC AGAATACCTC CCTCTCGATC CTACAGTAAT GACACTCTCT ATACCCCAGA
  GTGGGAAGGC AGGGTCCCAG ACTCCATCGA CTATCGAAAG AAAGGATACG TTACTCCAGT
  S
  AAGAACCAGG TGCCTTCTGT AGTGTGTGCT TGTGTGTGTA TGTGTGTGTG TGTGTGTGTG
  TGCGTGCTCA CGTGCGTGCG CGCACGCATC TGTGGTAATC TGACTGTGGT ATAGTTCATG
  CTACAAGAAT ATAGCATATT GTTACTTAAT TCATTACCTA TTTTGTATAT TTAGGATTTT
  TTTCTACTTT AAAATTTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774892	NES10757685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33126804					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774892	NES10757685	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95409008 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Coding-Synonymous
Rr375407	regulatory region 375407	139 bp upstream
Rr580954	regulatory region 580954	1317 bp distal
Tssr30559	transcription start site region 30559	1886 bp downstream
Tssr30560	transcription start site region 30560	1829 bp downstream
Tssr30561	transcription start site region 30561	1801 bp downstream
Tssr30562	transcription start site region 30562	826 bp upstream