rs33126016 SNP Detail

Summary

• ID
  rs33126016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67394509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATATATATGT GTGTATGTGT GTATACATGT ATATATATGT ATGTGTTTAT ACACACACAC
  ACACACACAC ACACACACAC ACATATATAT ATATATATAT ATATATATAT ATATATATAT
  ATATATATAT ATTTTAAACG AGAAGCCATG TCAAGACCGT CATATTAAAA AGAAACCAAA
  GGAATAGGGT CTACATGTCA GCTTTTAACT GTAAAGAAAT GGGATTACTG TCAGCACAGC
  CAGTTTGGAA AGGGATGGCC TAGCAAGATG GGTCAACTGG CTGAAGAGGA GGAAGGCACA
  S
  AAAACAGCAA AGGTCTGAAT ATTCTCTATA CTGAAAACGT GGTAATAGTA GGCAAGTCTG
  TTGCATAGTG AGCATCTTCT TTTTCTAAAT GGTAACAAGT CCAAGAAGTT TGTGCATGGC
  TTGTTCTGGA AATCAAATAA TAATTCTCAC TCTGTCTGTC TGTCTGTCTC TCTCTCTCTC
  TCTCTCTCCC CCCCTTTCTT CTCTCTTATT TTTCTCCCTT CCCTCCCTCT CTCCCTCCCT
  CTCTTCCTTT CTAAAAAGGT AAATGAAGAA AAGAGTGGTG TTGATTGCAA AAACAATCGA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45240043	mCV22605789	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33126016					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67394509 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	1706 bp upstream
Cpgi11705	CpG island 11705	956 bp proximal
Rr558220	regulatory region 558220	702 bp proximal
Rr558221	regulatory region 558221	1718 bp proximal
Tssr18010	transcription start site region 18010	1515 bp upstream