rs33125992 SNP Detail

Summary

• ID
  rs33125992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95408851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTAGGTG GATGAAATCT
  CTCGGCGTTT AATTTGGGAG AAAAACCTGA AGCAAATCTC TGCCCATAAC CTGGAGGCCT
  CTCTTGGTGT CCATACATAT GAACTGGCCA TGAACCACTT GGGAGACATG GTGAGTTGCC
  TCTCAGATCC AGGCCTGCCC ACTGTCTTTA CCCTGGTCCC TGCTAATGCT TGGCATCCTT
  Y
  CTTGTCTCAG ACCAGTGAAG AAGTGGTTCA GAAGATGACG GGACTCAGAA TACCTCCCTC
  TCGATCCTAC AGTAATGACA CTCTCTATAC CCCAGAGTGG GAAGGCAGGG TCCCAGACTC
  CATCGACTAT CGAAAGAAAG GATACGTTAC TCCAGTCAAG AACCAGGTGC CTTCTGTAGT
  GTGTGCTTGT GTGTGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774889	NES10757683	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33125992					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774889	NES10757683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95408851 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	296 bp upstream
Rr580954	regulatory region 580954	1160 bp distal
Tssr30559	transcription start site region 30559	1729 bp downstream
Tssr30560	transcription start site region 30560	1672 bp downstream
Tssr30561	transcription start site region 30561	1644 bp downstream
Tssr30562	transcription start site region 30562	983 bp upstream