rs33125988 SNP Detail

Summary

• ID
  rs33125988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95408806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTACCTA TATAACCACT
  CAGTCTACAA ATTTACTGAC TATCCTGTTT AGGTGGATGA AATCTCTCGG CGTTTAATTT
  GGGAGAAAAA CCTGAAGCAA ATCTCTGCCC ATAACCTGGA GGCCTCTCTT GGTGTCCATA
  CATATGAACT GGCCATGAAC CACTTGGGAG ACATGGTGAG TTGCCTCTCA GATCCAGGCC
  Y
  GCCCACTGTC TTTACCCTGG TCCCTGCTAA TGCTTGGCAT CCTTTCTTGT CTCAGACCAG
  TGAAGAAGTG GTTCAGAAGA TGACGGGACT CAGAATACCT CCCTCTCGAT CCTACAGTAA
  TGACACTCTC TATACCCCAG AGTGGGAAGG CAGGGTCCCA GACTCCATCG ACTATCGAAA
  GAAAGGATAC GTTACTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774883	NES10757679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33125988					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774883	NES10757679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95408806 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	341 bp upstream
Rr580954	regulatory region 580954	1115 bp distal
Tssr30559	transcription start site region 30559	1684 bp downstream
Tssr30560	transcription start site region 30560	1627 bp downstream
Tssr30561	transcription start site region 30561	1599 bp downstream
Tssr30562	transcription start site region 30562	1028 bp upstream