rs33125217 SNP Detail

Summary

• ID
  rs33125217
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95424801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATCTG AACTGGTTCT
  CATGATCTTC ACAGACACAA TGAGAGAGAA ATGAAGGCAT ACGAATGATA ATAGCATGCT
  CTACATTTAA TTACACAGGC TTTGTTGAAA CCAGAAGATC TGTGAGACTT CAGTATTGTT
  TATTTTTTGC CTGTAGTTTC CAACTCCTCT GCCACTGGAA AGCTTTTCTG AATCATTAAG
  M
  GGCTTTCTAC TTACACTGTG CTTGTCAGGA CTGCGGTAAT CCAGTCTGTC ACTTTGGTAC
  TTACAGTCAT AACGGCTTTC TTTCCTGAGG CTTTTAAATG ATTTGTTTGG GTTTTATTAT
  AGTGGGGGAG GTGCAGTGCC CTCAGAAGCC AGAAGATGGC ACCAGATCTC CTGGCGCTCA
  AATTGCGGGC ATTCCTGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46775138	NES10756704	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33125217					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775138	NES10756704	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95424801 () rs orientation: forward

Symbol	Name	Function Class
Rr580957	regulatory region 580957	1600 bp distal
Rr580958	regulatory region 580958	within coordinates
Rr580959	regulatory region 580959	145 bp proximal
Rr580960	regulatory region 580960	1065 bp proximal
Rr580961	regulatory region 580961	1576 bp proximal
Tssr34483	transcription start site region 34483	1487 bp downstream
Tssr34484	transcription start site region 34484	1546 bp downstream