rs33124894 SNP Detail

Summary

• ID
  rs33124894
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95407921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTTTTC CATATACAGC
  CAAGTGTGCC TGTCTCACAG TCAAATGAAG GGATTCTTGG GCATGGCTCA CACCTTTAGT
  CCTGGCACAG GGGAGAGGGG GTAGATCTTT AAATTCAAGG CCCTCTTGAT TAACATAGTG
  AGCTCAAGGC CAGCAAAGAC TTACATAAAA AGACCATGTC TCTGAAATGG CAGAAAGTCT
  S
  TGTGTGTATG TGGTGTTCTT TTGAGTTTAT GAATCCCTTA GGATTAGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT TATTTTTCTG GTAGAAAATT TATTTTTAAA GCTCTTAAAA
  GGTTAAAACT TTCCTGATAA CCTGTCTGCT GCCATTTGAA CATCCAAAGC CAACCTGTGA
  ATTTCTGCTA GTGGAAATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774865	NES10757708	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33124894					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774865	NES10757708	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95407921 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	1226 bp upstream
Rr580953	regulatory region 580953	1344 bp distal
Rr580954	regulatory region 580954	230 bp distal
Tssr30555	transcription start site region 30555	1390 bp downstream
Tssr30556	transcription start site region 30556	1381 bp downstream
Tssr30557	transcription start site region 30557	1345 bp downstream
Tssr30558	transcription start site region 30558	1321 bp downstream
Tssr30559	transcription start site region 30559	799 bp downstream
Tssr30560	transcription start site region 30560	742 bp downstream
Tssr30561	transcription start site region 30561	714 bp downstream
Tssr30562	transcription start site region 30562	1913 bp upstream