rs33124200 SNP Detail

Summary

• ID
  rs33124200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95422777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCGTGC GGGATGACTC
  TAACTCCGTC CTCCAGACCC TTGTGACAGA TAGGAGAACT GATTCCTGCA AGGTGTCTGA
  TCCACAAACA GACACGATGA ATAAGTAACT AAAAAAAAAA ATTAGAAGTA CATATTTATT
  TAGCTCCCAT TAAACAAATG TTTACTTTCC ATATTCTAGG TTATAAATAA TGTTCCAATT
  Y
  CTAGTTGATA TTCTGACACA AAGTTTAAAA TAGTTTGTCA GTCTTTTCAG TGGTTTGTGG
  GGTTGGGACT GCACACGTTG GGATGTCCAG TCATTGTGTA TGTGGGAGGT CAAAGGTCAA
  CCTTGGGCCT TGTTCTTCAG ATGCTGCCCA TCTTTTCACA AGGTCACTCA CTGGCCAGGG
  ACTCTCCGCG TAGGCTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775129	NES10756795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33124200					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775129	NES10756795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95422777 () rs orientation: forward

Symbol	Name	Function Class
Rr580957	regulatory region 580957	403 bp proximal
Rr580958	regulatory region 580958	839 bp proximal