rs33123995 SNP Detail

Summary

• ID
  rs33123995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155154294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCCATC CTCACCACCT
  ACCTCACCTG TCAGGGGATC AAATGCCACC TCTCCCCTCT CCCTCCAGCC AGTGCGCTCC
  TCCCACACTC ACTTATTATA GACACACCCA TAGTCTGGTC TCAGGCCTTA ACTTCCTTCC
  ATACTGCCAG ATAAAGCAAA ACCTGCCCAA GCAGTCATCT AGTTTAGCAG ATGTGCCTCC
  Y
  TTCCCAGTAG CTGCTGAATG CTGGGCACTG GGTTTTGCTG TAGGGCTTGC AGTTTTCCTG
  TTCCAGCCCA AGGCACGATG TAACCTGGTG TCTTCATTTC CCTGCCAGTG GGAAGGCAGA
  AGTGGAAGGC AGCATAGTTT TGTTGTGATG TGTATGGCAG ATACACCACT AGCCAGAGCA
  GAGGCTAGAC CAGCATCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775350	NES10983612	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33123995					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775350	NES10983612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155154294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex10	peroxisomal biogenesis factor 10			Intron
				Noncoding-Transcript-Variant
Rr606360	regulatory region 606360			183 bp distal
Rr606361	regulatory region 606361			1103 bp proximal