rs33123612 SNP Detail

Summary

• ID
  rs33123612
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95407679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTGGCT CTGTAACCAC
  GCTCACTGTG CTTATTCTGT TTATGTGCAC CCTTACCTGG GATACGGGGG TGGGGTGGGG
  GTGGCATAAG AGCTGCCGAG CCTTTCCCAG TTACTTCTAC GCACTGCGGT TGCCTAAAGT
  GTGTGCAGTG TTGGTGGAAC ATACGGGAGT TACAATGATT AAGTCAGATG ATCCGGCACC
  W
  CCTGAACTTC TGTCTGTTTT ATGTGAGAAT CACCTGCAAT TCCTTGTTTT CCATATACAG
  CCAAGTGTGC CTGTCTCACA GTCAAATGAA GGGATTCTTG GGCATGGCTC ACACCTTTAG
  TCCTGGCACA GGGGAGAGGG GGTAGATCTT TAAATTCAAG GCCCTCTTGA TTAACATAGT
  GAGCTCAAGG CCAGCAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774862	NES10757819	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33123612					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774862	NES10757819	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95407679 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	1468 bp upstream
Rr580952	regulatory region 580952	1800 bp distal
Rr580953	regulatory region 580953	1102 bp distal
Rr580954	regulatory region 580954	within coordinates
Tssr30555	transcription start site region 30555	1148 bp downstream
Tssr30556	transcription start site region 30556	1139 bp downstream
Tssr30557	transcription start site region 30557	1103 bp downstream
Tssr30558	transcription start site region 30558	1079 bp downstream
Tssr30559	transcription start site region 30559	557 bp downstream
Tssr30560	transcription start site region 30560	500 bp downstream
Tssr30561	transcription start site region 30561	472 bp downstream