rs33123610 SNP Detail

Summary

• ID
  rs33123610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95407642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTATGC ACAAAGCCTG
  AAGTGTACTG TAGCTAGAAC TCTGGCTCTG TAACCACGCT CACTGTGCTT ATTCTGTTTA
  TGTGCACCCT TACCTGGGAT ACGGGGGTGG GGTGGGGGTG GCATAAGAGC TGCCGAGCCT
  TTCCCAGTTA CTTCTACGCA CTGCGGTTGC CTAAAGTGTG TGCAGTGTTG GTGGAACATA
  Y
  GGGAGTTACA ATGATTAAGT CAGATGATCC GGCACCTCCT GAACTTCTGT CTGTTTTATG
  TGAGAATCAC CTGCAATTCC TTGTTTTCCA TATACAGCCA AGTGTGCCTG TCTCACAGTC
  AAATGAAGGG ATTCTTGGGC ATGGCTCACA CCTTTAGTCC TGGCACAGGG GAGAGGGGGT
  AGATCTTTAA ATTCAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774859	NES10757818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33123610					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774859	NES10757818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95407642 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	1505 bp upstream
Rr580952	regulatory region 580952	1763 bp distal
Rr580953	regulatory region 580953	1065 bp distal
Rr580954	regulatory region 580954	within coordinates
Tssr30555	transcription start site region 30555	1111 bp downstream
Tssr30556	transcription start site region 30556	1102 bp downstream
Tssr30557	transcription start site region 30557	1066 bp downstream
Tssr30558	transcription start site region 30558	1042 bp downstream
Tssr30559	transcription start site region 30559	520 bp downstream
Tssr30560	transcription start site region 30560	463 bp downstream
Tssr30561	transcription start site region 30561	435 bp downstream