rs33123606 SNP Detail

Summary

• ID
  rs33123606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95407498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTATGAT CAGAGCTGTT
  TCCTGCCTAA AGGAGAGGAG GTGGAAAGAA AAAAGTGGAC AAGGCAAATG AAGATACAGT
  GAACGTAAAT ACCATCAAAA TGGTCCTGTC CTCTCCTGGC AAGATCTGGG TGTAGGCAAG
  GAAGAATACT ATGCACAAAG CCTGAAGTGT ACTGTAGCTA GAACTCTGGC TCTGTAACCA
  Y
  GCTCACTGTG CTTATTCTGT TTATGTGCAC CCTTACCTGG GATACGGGGG TGGGGTGGGG
  GTGGCATAAG AGCTGCCGAG CCTTTCCCAG TTACTTCTAC GCACTGCGGT TGCCTAAAGT
  GTGTGCAGTG TTGGTGGAAC ATACGGGAGT TACAATGATT AAGTCAGATG ATCCGGCACC
  TCCTGAACTT CTGTCTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774853	NES10757816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33123606					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774853	NES10757816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95407498 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	1649 bp upstream
Rr580952	regulatory region 580952	1619 bp distal
Rr580953	regulatory region 580953	921 bp distal
Rr580954	regulatory region 580954	within coordinates
Tssr30555	transcription start site region 30555	967 bp downstream
Tssr30556	transcription start site region 30556	958 bp downstream
Tssr30557	transcription start site region 30557	922 bp downstream
Tssr30558	transcription start site region 30558	898 bp downstream
Tssr30559	transcription start site region 30559	376 bp downstream
Tssr30560	transcription start site region 30560	319 bp downstream
Tssr30561	transcription start site region 30561	291 bp downstream