rs33122407 SNP Detail

Summary

• ID
  rs33122407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95406541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTGAAT ATTGTGCTAT
  CTTATTTTTG CCCCCCAAAG TCAGTCAGAT GAAACTAAAC ACTTAGCAGC TATCCACACT
  GGCATATGAT ACTGTATACA CACATTGTGC AAATGTGTGT CCTTCCTCCC TAACCCCTCC
  TCCTTTTCAT CCTATCCCTG ACTCCCTCCC TTATCCAGAT TTTCCAGCCA CTGCTGGAGT
  Y
  GACTTCCGCA ATCCTTACCG AATAAATCTA GCACCCTTAG TCTTCCGCTC ACAGTAGCCA
  CGCTTCCTAT CCGAAAAGAG CCTAGCGAAC AGATTCTCAA CAGCAGGTAA CATTTTTAAC
  TTCTGGATCT TTTAGCGTCT TGTTCCTACC AATTAACCTT ATTTTAAGAA GAGAAAGGAT
  ATAATGAATT GGGGATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774838	NES10757810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33122407					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774838	NES10757810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95406541 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	1990 bp downstream
Ctsk	cathepsin K	mRNA-UTR
Rr580952	regulatory region 580952	662 bp distal
Rr580953	regulatory region 580953	within coordinates
Rr580954	regulatory region 580954	411 bp proximal
Tssr30555	transcription start site region 30555	10 bp downstream
Tssr30556	transcription start site region 30556	1 bp downstream
Tssr30557	transcription start site region 30557	26 bp upstream
Tssr30558	transcription start site region 30558	43 bp upstream
Tssr30559	transcription start site region 30559	562 bp upstream
Tssr30560	transcription start site region 30560	626 bp upstream
Tssr30561	transcription start site region 30561	661 bp upstream