rs33122405 SNP Detail

Summary

• ID
  rs33122405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95406077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCATCC AGTGTGTATG
  TTGAGGGGAC AGAGGTGTGC CCATAGCCAG TGATGGCTTT GCTTTAGCTT CCTGAATATC
  TGGGATTACT GCACTGTCTC ACACACGTGA CTTTCTGGCC ACTTTTGAAC CATCTCACCT
  GGACTTTGTG GGCAGCTCCT CCCTTGATGT ACAGCCATAA TGGGTTAGAA AAACTACTCC
  M
  TGCCCAGAAG CAGTTAATAG CAAACAGTCA CAAAACGGTT TTAAATGTTT AAATTAGAGC
  CTTACATTTC TAGCCTTTCC TCCCCTCTCC CTCACTCCAC CCCCATCATC TCAGAAGAGG
  ATCTGACACA ACGTTGGAAA TGGTGCAGAG TAAGGAGGTG GGTCAGAACT AGATGAGTTG
  AAAAGATGGA AATTGCCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774835	NES10757807	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33122405					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774835	NES10757807	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95406077 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	1526 bp downstream
Ctsk	cathepsin K	490 bp upstream
Rr580952	regulatory region 580952	198 bp distal
Rr580953	regulatory region 580953	366 bp proximal
Rr580954	regulatory region 580954	875 bp proximal
Tssr30555	transcription start site region 30555	451 bp upstream
Tssr30556	transcription start site region 30556	457 bp upstream
Tssr30557	transcription start site region 30557	490 bp upstream
Tssr30558	transcription start site region 30558	507 bp upstream
Tssr30559	transcription start site region 30559	1026 bp upstream
Tssr30560	transcription start site region 30560	1090 bp upstream
Tssr30561	transcription start site region 30561	1125 bp upstream