rs33122178 SNP Detail

Summary

• ID
  rs33122178
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155153552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTGGGTG CGTCACCACG
  CAGCCACCCT GACTGAACAA CAGAGGAAGG CCCTCCAGCG GGCAGTCTTC ATCCTGAGAC
  AGGGCTTCGC CTGCCTCCAT CGGCTCCACG TGGCTTGGTT TTATATTCAT GGTACCTTCT
  ACCACCTGGC CAAGAGACTA GCAGGGATCA CGTATGTAAG TAGCCATGCC AAGGGGACTG
  D
  TATTCAGGCA GGGATCCTCT GAGCAGCATA CTTGGGGACC CATGCTGACA TGATCGCAGC
  CAAGTGTTCT GCTTCCAAGT TGCAATCGAA ATTCTGTACT TGGGAAAGAG CGGAGTTCAG
  TTTTATTTTC CAAGAAAGCC CAGGAAAAGG AAAAGAAATC CAGTTCCCAC AGACTGAAGG
  TGGCAGCAGA CTTGGGTGCG                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775329	NES10983596	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	G	A
ss148112031	ENSMUSSNP4392780	ENSEMBL	ENSEMBL_Sanger	f	SNP								A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33122178					SNP	A	A	A	A	A	A	A	A	A	A	T	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775329	NES10983596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155153552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15457	CpG island 15457			1556 bp distal
Pex10	peroxisomal biogenesis factor 10			Intron
				Noncoding-Transcript-Variant
Rr398914	regulatory region 398914			1941 bp downstream
Rr606360	regulatory region 606360			220 bp proximal
Rr606361	regulatory region 606361			1845 bp proximal