rs33121522 SNP Detail

Summary

• ID
  rs33121522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95406041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGTGGC ATTGACCTCA
  CAGAGAACCA TCCACCCCTG CCATCCAGTG TGTATGTTGA GGGGACAGAG GTGTGCCCAT
  AGCCAGTGAT GGCTTTGCTT TAGCTTCCTG AATATCTGGG ATTACTGCAC TGTCTCACAC
  ACGTGACTTT CTGGCCACTT TTGAACCATC TCACCTGGAC TTTGTGGGCA GCTCCTCCCT
  Y
  GATGTACAGC CATAATGGGT TAGAAAAACT ACTCCATGCC CAGAAGCAGT TAATAGCAAA
  CAGTCACAAA ACGGTTTTAA ATGTTTAAAT TAGAGCCTTA CATTTCTAGC CTTTCCTCCC
  CTCTCCCTCA CTCCACCCCC ATCATCTCAG AAGAGGATCT GACACAACGT TGGAAATGGT
  GCAGAGTAAG GAGGTGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46774832	NES10757805	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33121522					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774832	NES10757805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95406041 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	1490 bp downstream
Ctsk	cathepsin K	526 bp upstream
Rr580952	regulatory region 580952	162 bp distal
Rr580953	regulatory region 580953	402 bp proximal
Rr580954	regulatory region 580954	911 bp proximal
Tssr30554	transcription start site region 30554	1995 bp downstream
Tssr30555	transcription start site region 30555	487 bp upstream
Tssr30556	transcription start site region 30556	493 bp upstream
Tssr30557	transcription start site region 30557	526 bp upstream
Tssr30558	transcription start site region 30558	543 bp upstream
Tssr30559	transcription start site region 30559	1062 bp upstream
Tssr30560	transcription start site region 30560	1126 bp upstream
Tssr30561	transcription start site region 30561	1161 bp upstream