rs33121520 SNP Detail

Summary

• ID
  rs33121520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95406005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGGCTCT GGCTGACTTT
  GGACTCACTC TGTAGACTGT TGTGGCATTG ACCTCACAGA GAACCATCCA CCCCTGCCAT
  CCAGTGTGTA TGTTGAGGGG ACAGAGGTGT GCCCATAGCC AGTGATGGCT TTGCTTTAGC
  TTCCTGAATA TCTGGGATTA CTGCACTGTC TCACACACGT GACTTTCTGG CCACTTTTGA
  R
  CCATCTCACC TGGACTTTGT GGGCAGCTCC TCCCTTGATG TACAGCCATA ATGGGTTAGA
  AAAACTACTC CATGCCCAGA AGCAGTTAAT AGCAAACAGT CACAAAACGG TTTTAAATGT
  TTAAATTAGA GCCTTACATT TCTAGCCTTT CCTCCCCTCT CCCTCACTCC ACCCCCATCA
  TCTCAGAAGA GGATCTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774829	NES10757803	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33121520					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774829	NES10757803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95406005 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	1454 bp downstream
Ctsk	cathepsin K	562 bp upstream
Rr580952	regulatory region 580952	126 bp distal
Rr580953	regulatory region 580953	438 bp proximal
Rr580954	regulatory region 580954	947 bp proximal
Tssr30554	transcription start site region 30554	1959 bp downstream
Tssr30555	transcription start site region 30555	523 bp upstream
Tssr30556	transcription start site region 30556	529 bp upstream
Tssr30557	transcription start site region 30557	562 bp upstream
Tssr30558	transcription start site region 30558	579 bp upstream
Tssr30559	transcription start site region 30559	1098 bp upstream
Tssr30560	transcription start site region 30560	1162 bp upstream
Tssr30561	transcription start site region 30561	1197 bp upstream