rs33121515 SNP Detail

Summary

• ID
  rs33121515
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95405721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGTAT CAGATCCCAT
  TACAGATGGT TTTGAGCCAC CATGTGGTTG CTGGGAATTG AACTTAGGAC CTCTGGAAGA
  ATAGGCAGTG CTTTTAACTG CTGAGCCATC TCCCTGGCCC TGTAGGGCAT TTCTTAGTGG
  TTGATGGGAG AGAGCCCAGC TCACTGTGGA TGGTGCCATT CCTGGGCTGG TGCCCCAGCC
  K
  TTGTTATTTT TAGACAGGAT CTCACTAAAT TGCCTAGAGT AGGTTGACCT TGAAAGTAAG
  TTCTTACTTA GAGACGTCTC ACTGTATGGC TCTGGCTGAC TTTGGACTCA CTCTGTAGAC
  TGTTGTGGCA TTGACCTCAC AGAGAACCAT CCACCCCTGC CATCCAGTGT GTATGTTGAG
  GGGACAGAGG TGTGCCCATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46774823	NES10757822	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33121515					SNP	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774823	NES10757822	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95405721 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	1170 bp downstream
Ctsk	cathepsin K	846 bp upstream
Rr580952	regulatory region 580952	within coordinates
Rr580953	regulatory region 580953	722 bp proximal
Rr580954	regulatory region 580954	1231 bp proximal
Tssr30554	transcription start site region 30554	1675 bp downstream
Tssr30555	transcription start site region 30555	807 bp upstream
Tssr30556	transcription start site region 30556	813 bp upstream
Tssr30557	transcription start site region 30557	846 bp upstream
Tssr30558	transcription start site region 30558	863 bp upstream
Tssr30559	transcription start site region 30559	1382 bp upstream
Tssr30560	transcription start site region 30560	1446 bp upstream
Tssr30561	transcription start site region 30561	1481 bp upstream