rs33120777 SNP Detail

Summary

• ID
  rs33120777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157147253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTAGAATT ATTCATGTTT TACCCTATTT AAGTACTTTA TTCATTTGTG GGGCTGACTA
  AAAAACACGT TGTTTATTTA TATTTGGTAC TTGTACTTAA ACACTGTGTG TTTTTAAGAT
  TTATTTTTAT GTATGAGTGT CTTGCCTGCG TGTATCTAAG TGCACCAAGT GTGCCTAGTG
  CCCACAGAGG CGAGAAGAGG GCATTGGATC CCCAGAAACT GGAGCTAGGG GTAGTTGGCT
  GGGCCATGTG GGTGCTAGTA ATCAAACCCA GGTCCTCTGC TGAGCCACCT TGTCGTCCCC
  Y
  CCCCCCCCAT CCCTCCACTT CCGTTTGCTT CTCTTTTAAA TGTTTGACTT AGAAGAGTTC
  TTTATAGATC TTTGGCTATA ATTTCCTTGT CGGATACATG ATTTACAGAA ATTTTCTCCA
  CTCTTTAAGT GGTCTTCAGT TTTTCTTGAT ACTGTCTTTT TAAACACAAA AGATTTTAAT
  TTATGTTTTC TTTTGTCACT TGTGATTTAG ATATTATATA AGAAACCATT TTCTAAACCA
  AAATCATAGA GATGCTTTTT AATAAGAATT TTATATTTTC AAAAGCTCTT AACCTAAGGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45239428	mCV24816406	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33120777					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157147253 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			1305 bp proximal