rs33117644 SNP Detail

Summary

• ID
  rs33117644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75511650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCACCAAGA GGTTTTTACA CTTAATTGTT CATGGGTTGC
  TGGTCACAAA CTTATTATGT GCCAAAAAGA TAGCCTTGAC TCCTATCTTC TTGCCTGCAT
  Y
  TCCCCAGTGC TGGGATTACA GGCATATGCC ACCCATACCT GGCTGTCATC TAATTGTTCC
  AGTGGGCCAG GGACATCCAG TGTGATCCCT GTCTGGCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45239610	mCV25010631	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146768185	ENSMUSSNP2186234	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33117644					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75511650 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	994 bp upstream
Rr559542	regulatory region 559542	37 bp proximal
Rr559543	regulatory region 559543	878 bp proximal
Rr559544	regulatory region 559544	1166 bp proximal
Rr559545	regulatory region 559545	1370 bp proximal
Rr559546	regulatory region 559546	1456 bp proximal
Tssr18460	transcription start site region 18460	1893 bp upstream
Tssr24650	transcription start site region 24650	1901 bp upstream
Tssr24651	transcription start site region 24651	1874 bp upstream