rs33112139 SNP Detail

Summary

• ID
  rs33112139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTATG AGGTAACAAC
  TCAACAGACT CTCTCCTAAG CACAAACTGC AGGAAGTGTG GTGTCCACAT GGAGAGAAGG
  AAGATTCTGA TGTCACTAAA ATGATTTGAC TTTAATGGTA TGTAAGTAAT AAGCTTTAAC
  TTTCAAATGT ATTGAGTCAT TACTTGCAGT GAAGTCAGTA TTCAGGTGTG CCCATCCCCT
  Y
  CCCTGCTAGC TCTGTGCTCT TCGGAGTTGT TGCCCCTGTG TCCCATGTGC CTCTCTTCTG
  TGGAAGTGTA ACTTAAATGC AGAGAGAAGC TAACGGGCCT CTTTATCCCC CACTGCACTC
  CTAGAGAGGT TTCCCTGGAT CCACACACCC AGCTTTTGAT GAACAGCAAC TTCCTTCACA
  CAACACACAC TGGAGCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45238922	mCV22279966	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147540743	ENSMUSSNP611758	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320500684	CHEV_2_127582234	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33112139					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598418 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	668 bp proximal
Tssr26143	transcription start site region 26143	780 bp upstream