rs33111612 SNP Detail

Summary

• ID
  rs33111612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148715668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG ACCAAAGAAC CTACAACTCC
  Y
  TATACTTTGC TCCATCTGTT GCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45238665	mCV22550519	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147934874	ENSMUSSNP6640548	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320557214	CHEV_2_148699484	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33111612					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148715668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			384 bp upstream
Rr566976	regulatory region 566976			1784 bp proximal
Rr566977	regulatory region 566977			1818 bp proximal
Tssr20680	transcription start site region 20680			1754 bp downstream
Tssr20681	transcription start site region 20681			857 bp downstream
Tssr20682	transcription start site region 20682			1400 bp upstream
Tssr20683	transcription start site region 20683			1476 bp upstream
Tssr26682	transcription start site region 26682			1788 bp upstream
Tssr26683	transcription start site region 26683			1738 bp upstream
Tssr26684	transcription start site region 26684			1701 bp upstream
Tssr26685	transcription start site region 26685			842 bp upstream
Tssr26686	transcription start site region 26686			809 bp upstream
Tssr26687	transcription start site region 26687			678 bp upstream
Tssr26688	transcription start site region 26688			1673 bp downstream
Tssr26689	transcription start site region 26689			1704 bp downstream
Tssr26690	transcription start site region 26690			1856 bp downstream
Tssr26691	transcription start site region 26691			1875 bp downstream