rs33111083 SNP Detail

Summary

• ID
  rs33111083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95122496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTATAAA CAATGCTTAA
  CTTTCAAGCT AATTTTCATT AAAATTTTTG TTCTTGTTGA CTGTGCTTCT ATGAAGCATT
  TTAATTGTTG GCTGTCAATA TTCTGTAGAA ATACAACAAA AGACAGAGAG CAACATTTCT
  GAGTTGCTAG GACTTCTCTG ACCCACAGAG GATATGGAAC TCAAAGACAA GAACAGACTC
  Y
  AGGCAGGACT GACCTAAAAG CCACTCCTTC TACACCTCTT GCTTAAATGT GGTTCTGAAG
  GCTTTATTGG TACTAACTCT AGACATCATT CTCCTAACGT GGGATCGGAT CAGACCAATC
  TGGACAGAGC ATCATGTGAT GAGGAATAGT TGAGATCAAA GCACCAGGCA TATCAAAGCT
  GTCTTCAGAG AAAACTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772315	NES10661630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33111083					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772315	NES10661630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95122496 () rs orientation: forward

Symbol	Name	Function Class
Gabpb2	GA repeat binding protein, beta 2	Intron
Rr367482	regulatory region 367482	1747 bp upstream
Rr580849	regulatory region 580849	1951 bp distal
Rr580850	regulatory region 580850	1254 bp distal
Rr580851	regulatory region 580851	1653 bp proximal