rs33111081 SNP Detail

Summary

• ID
  rs33111081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95122478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATCACT CATGGAGAAC
  CCTATAAACA ATGCTTAACT TTCAAGCTAA TTTTCATTAA AATTTTTGTT CTTGTTGACT
  GTGCTTCTAT GAAGCATTTT AATTGTTGGC TGTCAATATT CTGTAGAAAT ACAACAAAAG
  ACAGAGAGCA ACATTTCTGA GTTGCTAGGA CTTCTCTGAC CCACAGAGGA TATGGAACTC
  R
  AAGACAAGAA CAGACTCCAG GCAGGACTGA CCTAAAAGCC ACTCCTTCTA CACCTCTTGC
  TTAAATGTGG TTCTGAAGGC TTTATTGGTA CTAACTCTAG ACATCATTCT CCTAACGTGG
  GATCGGATCA GACCAATCTG GACAGAGCAT CATGTGATGA GGAATAGTTG AGATCAAAGC
  ACCAGGCATA TCAAAGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46772312	NES10661627	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33111081					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772312	NES10661627	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95122478 () rs orientation: forward

Symbol	Name	Function Class
Gabpb2	GA repeat binding protein, beta 2	Intron
Rr367482	regulatory region 367482	1765 bp upstream
Rr580849	regulatory region 580849	1933 bp distal
Rr580850	regulatory region 580850	1236 bp distal
Rr580851	regulatory region 580851	1671 bp proximal