rs33111078 SNP Detail

Summary

• ID
  rs33111078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95121612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAATACT GTTCGAGACT
  GGAGGGGTGG CTCAGCAGTT ATGAGTACTA GCTGCTCTTC CAAAGGTTCT GAGTTCAATT
  CCCAGAAATC ACATGACTCA AAATGGCTCA CAACCATCTA TAATGGGATC TGATGCTCTC
  TTCTGACATG CAGGTATACA TGCAGAAAGA ACACTCATAC GTAAAGCATG CCATTTGAGT
  R
  ATTCTGCTTT TTAAAACCTG GGTCTCCATC TGTTGGCCCC ACAATTAAAG AAATGAGTCT
  ATAACTCTTA CTATATTTGT GAAGGCCTAA TGTTTGCTTT TATTGATGCA GTAGGCCAGG
  AAAGTTATAG ATTTTTTTTT TAAATGGGTA TACGCTGAGC TAACATACAG AGAGAATTTC
  TGCATAGTTC TTCTGTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772306	NES10661699	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33111078					SNP	G	G	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772306	NES10661699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95121612 () rs orientation: forward

Symbol	Name	Function Class
Gabpb2	GA repeat binding protein, beta 2	Intron
Rr580849	regulatory region 580849	1067 bp distal
Rr580850	regulatory region 580850	370 bp distal