rs33110566 SNP Detail

Summary

• ID
  rs33110566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95180792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCCCAG TCTCCCAGAC
  TCCAAAGATT GTCCAAGATG GCTGTGGACC AAAGTGACAG GAAAACCCAA GATAACTGAC
  TCAGAGATAA CTGACTCCCT GAAGCCAGAA GGGGTGTAAA CACAGCTGAG GGAAGCAGAA
  GGGGACCAGA GAAAGGCTGA GTGAGGGGTG CGAGGAAGGT CTCAGAGAGC TTTTCAAATC
  M
  CTGTAACATT GCAGCTGAAT CATGGCCAGT CAGCTCCCCA GCGCGGAGGA AAGGGACCAA
  AGCCACTTCA CAGCGTGAAG GGAGGAGACA TGGTCTCCAA TTATAAGATG AGCACCAAAC
  TCTGGTGCTT AGCTAAGGCC AGCAGCAGAT GGCCACGCTT TGTCACAGGT GGCAGCCCTG
  GACCTGGGGT GGCCAAAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772798	NES10658938	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	A	A	A	A	A	A	C	A
ss135510395	ENSMUSSNP3212373	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33110566					SNP	C	C	A	A	A	C	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772798	NES10658938	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95180792 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	within coordinates
Rr580882	regulatory region 580882	703 bp proximal
Rr580883	regulatory region 580883	1162 bp proximal