rs33109996 SNP Detail

Summary

• ID
  rs33109996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95148611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCACGT GCCTCGCCCC
  TCCCCTAAGT GCTCTTACTG CGCAGGGCCA GCAGCCCCAG GGGCTGAGCT AAAAGTCCGG
  AGGAACCCTG GTAAGCAAGA ATTCTGTGCA GGAACCAGAA AGATTGTGAT GTAAGGGCTT
  GAGGGGAACC TGTTGGTCCC TAGGCACAGA CTTAAATCTC TCATCACAGT TTATTAAAGG
  Y
  CACAGGTCTG AATTTACTGA GAGTGAAAAC ACAGGTTTTG ACAGCAGTTC TCAGGATCAC
  AGGCAGCTGA CTACTAAGAA GGGGTTGGCT TTTCAAGATT TTGCAAGCTG GCTCCTGGGC
  TCCCGGCAGA CAGGCTGGCT GTGGCTGCTG GTTAAGCCTT CCATCCACCT CCCCTCAAAG
  ACTGCTAAGA CAACTAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772489	NES10660411	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33109996					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772489	NES10660411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95148611 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	mRNA-UTR
Gm128	predicted gene 128	mRNA-UTR
Rr580872	regulatory region 580872	81 bp distal
Tssr34451	transcription start site region 34451	275 bp upstream
Tssr34452	transcription start site region 34452	197 bp upstream
Tssr34453	transcription start site region 34453	154 bp upstream
Tssr34454	transcription start site region 34454	118 bp upstream