rs33109552 SNP Detail

Summary

• ID
  rs33109552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144112866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCG TGGAGGGGAT GGCGCCTCAC
  R
  GGTGCGACGG GAACGCCGTA GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45238896	mCV22516074	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147789057	ENSMUSSNP2943701	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320535410	CHEV_2_144096682	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33109552					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144112866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			within coordinates
Mgme1	mitochondrial genome maintenance exonuclease 1			mRNA-UTR
				Splice-Site
Rr397362	regulatory region 397362			within coordinates
Rr397363	regulatory region 397363			470 bp upstream
Rr566424	regulatory region 566424			1434 bp distal
Rr566425	regulatory region 566425			385 bp distal
Rr566426	regulatory region 566426			within coordinates
Rr566427	regulatory region 566427			6 bp proximal
Snx5	sorting nexin 5			153 bp upstream
Tssr20524	transcription start site region 20524			355 bp downstream
Tssr20525	transcription start site region 20525			274 bp downstream
Tssr20526	transcription start site region 20526			within coordinates
Tssr20527	transcription start site region 20527			65 bp upstream
Tssr20528	transcription start site region 20528			682 bp upstream
Tssr26594	transcription start site region 26594			878 bp upstream
Tssr26595	transcription start site region 26595			460 bp upstream
Tssr26596	transcription start site region 26596			413 bp upstream
Tssr26597	transcription start site region 26597			146 bp upstream
Tssr26598	transcription start site region 26598			99 bp upstream
Tssr26599	transcription start site region 26599			83 bp upstream