rs33109315 SNP Detail

Summary

• ID
  rs33109315
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157147252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTTAGAAT TATTCATGTT TTACCCTATT TAAGTACTTT ATTCATTTGT GGGGCTGACT
  AAAAAACACG TTGTTTATTT ATATTTGGTA CTTGTACTTA AACACTGTGT GTTTTTAAGA
  TTTATTTTTA TGTATGAGTG TCTTGCCTGC GTGTATCTAA GTGCACCAAG TGTGCCTAGT
  GCCCACAGAG GCGAGAAGAG GGCATTGGAT CCCCAGAAAC TGGAGCTAGG GGTAGTTGGC
  TGGGCCATGT GGGTGCTAGT AATCAAACCC AGGTCCTCTG CTGAGCCACC TTGTCGTCCC
  M
  CCCCCCCCCA TCCCTCCACT TCCGTTTGCT TCTCTTTTAA ATGTTTGACT TAGAAGAGTT
  CTTTATAGAT CTTTGGCTAT AATTTCCTTG TCGGATACAT GATTTACAGA AATTTTCTCC
  ACTCTTTAAG TGGTCTTCAG TTTTTCTTGA TACTGTCTTT TTAAACACAA AAGATTTTAA
  TTTATGTTTT CTTTTGTCAC TTGTGATTTA GATATTATAT AAGAAACCAT TTTCTAAACC
  AAAATCATAG AGATGCTTTT TAATAAGAAT TTTATATTTT CAAAAGCTCT TAACCTAAGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45238830	mCV24816407	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33109315					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157147252 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			1306 bp proximal