rs33109033 SNP Detail

Summary

• ID
  rs33109033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95148386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATCGTGG TAGCGGTCGG
  GGTAGTCGTT TGGTCTTCGG CCCCCGCCGC CCGGTACTCC AGACTTAGCA GCAGGGCCCA
  GAGCAGCATG CAGGCGGCGG GGACCATGGG GCTGGGAGTC TTGAGGTCGA GAGGTAGGCC
  CAGGCTCCTA CCTTCTCTCC CTCCCTTCCG CTCTCCACCA ACCCGCCAGG TCTCGAGGTC
  S
  TTTGAACCGA CCAGGAGGGT GCTCAGAGGC ACGTGCCTCG CCCCTCCCCT AAGTGCTCTT
  ACTGCGCAGG GCCAGCAGCC CCAGGGGCTG AGCTAAAAGT CCGGAGGAAC CCTGGTAAGC
  AAGAATTCTG TGCAGGAACC AGAAAGATTG TGATGTAAGG GCTTGAGGGG AACCTGTTGG
  TCCCTAGGCA CAGACTTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772486	NES10660410	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	C		G	G	C	G
ss135510272	ENSMUSSNP4618216	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G										C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33109033					SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772486	NES10660410	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95148386 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	201 bp downstream
Cpgi13505	CpG island 13505	within coordinates
Gm128	predicted gene 128	mRNA-UTR
Rr580869	regulatory region 580869	1800 bp distal
Rr580870	regulatory region 580870	1888 bp distal
Rr580871	regulatory region 580871	1796 bp distal
Rr580872	regulatory region 580872	within coordinates
Tssr34451	transcription start site region 34451	50 bp upstream
Tssr34452	transcription start site region 34452	within coordinates
Tssr34453	transcription start site region 34453	55 bp downstream
Tssr34454	transcription start site region 34454	83 bp downstream