rs33109031 SNP Detail

Summary

• ID
  rs33109031
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95147564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGGCA GGATGGGTCT
  GCGTCTCAGG TGGACAGGAA CCAGAGAAGT GGTGCTGCTC TGAAAGGGAG CACGAGAGCT
  GCAGCTATGG TCAGAACAGA GGCTCGAGTC CAGAGGGCAT TCCTCCAGGT GCCTGTTGCA
  AGCGCACAAC TGGTAGGTGC AAGGCCGGTG TTCTGTGCGG AGTTCATTCA GTGCCCCAAC
  W
  CGAAGGCGCC CAGAAAGGCC ATGCAGCTTT CCAGCCCGGC TCCTACTCAT AGTGCCTGAC
  TTACAGTGGC AATGCCAAGG GCCCCAAGGC ATCAGTACTA CCCGCAGATC CTCAGGAGAT
  GGCATGGCTG TGAATGAGGG TTTTAGCCAT GGGGATGGGG TGGACCCGGG TGTCGACCAC
  TGTTGCAGGG TGGACTCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772483	NES10660409	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33109031					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772483	NES10660409	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95147564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like			1023 bp downstream
Gm128	predicted gene 128			Coding-Synonymous
				Intron
Rr580869	regulatory region 580869			978 bp distal
Rr580870	regulatory region 580870			1066 bp distal
Rr580871	regulatory region 580871			974 bp distal
Rr580872	regulatory region 580872			706 bp proximal
Tssr34451	transcription start site region 34451			767 bp downstream
Tssr34452	transcription start site region 34452			791 bp downstream
Tssr34453	transcription start site region 34453			877 bp downstream
Tssr34454	transcription start site region 34454			905 bp downstream