rs33109028 SNP Detail

Summary

• ID
  rs33109028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95147549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGCTCG GGCTAGTGGG
  TGGCAGGATG GGTCTGCGTC TCAGGTGGAC AGGAACCAGA GAAGTGGTGC TGCTCTGAAA
  GGGAGCACGA GAGCTGCAGC TATGGTCAGA ACAGAGGCTC GAGTCCAGAG GGCATTCCTC
  CAGGTGCCTG TTGCAAGCGC ACAACTGGTA GGTGCAAGGC CGGTGTTCTG TGCGGAGTTC
  R
  TTCAGTGCCC CAACTCGAAG GCGCCCAGAA AGGCCATGCA GCTTTCCAGC CCGGCTCCTA
  CTCATAGTGC CTGACTTACA GTGGCAATGC CAAGGGCCCC AAGGCATCAG TACTACCCGC
  AGATCCTCAG GAGATGGCAT GGCTGTGAAT GAGGGTTTTA GCCATGGGGA TGGGGTGGAC
  CCGGGTGTCG ACCACTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772480	NES10660408	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33109028					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772480	NES10660408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95147549 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like			1038 bp downstream
Cpgi13505	CpG island 13505			537 bp proximal
Gm128	predicted gene 128			Coding-Synonymous
				Intron
Rr580869	regulatory region 580869			963 bp distal
Rr580870	regulatory region 580870			1051 bp distal
Rr580871	regulatory region 580871			959 bp distal
Rr580872	regulatory region 580872			721 bp proximal
Tssr34451	transcription start site region 34451			782 bp downstream
Tssr34452	transcription start site region 34452			806 bp downstream
Tssr34453	transcription start site region 34453			892 bp downstream
Tssr34454	transcription start site region 34454			920 bp downstream