rs33109026 SNP Detail

Summary

• ID
  rs33109026
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95147047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGAAAAA AAAAAAAAAA
  GAAAAGAAAC AGACAGCTGA GCCTCCCTCC GTGCTGAAGG CTGAGGTGCT GGGAGTTATA
  GGCCAGTCTA GACAACGTAG TGGAACTCCA TCAAAACAAA ATGGGGGTGG GGTGGTTAGG
  GAAGTAAGCA GGCTGGCCAT CTAGTTCCGT AGAATACTGT GAGTTAAGGG CTCAGATCTC
  W
  GTAGCATGTG CATGTGTACC CCATACACAT CAAACAAAAC AGAAAATGGG CCAAGACTAG
  ACTAACCAGT GCAAATTAAG GCTCAGTAAC TGACCAGTCA GTCAGTCAGT CACTCTTGCA
  AGAACAATGG CTGTGTTTAG CAACGGGATT TGGGACATGG GAGACTTTAA GATTCGTCAA
  GAAAAAGGTC CTGGGCTCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46772477	NES10660407	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33109026					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772477	NES10660407	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95147047 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	1540 bp downstream
Cpgi13505	CpG island 13505	1039 bp proximal
Gm128	predicted gene 128	Intron
Rr580868	regulatory region 580868	1828 bp distal
Rr580869	regulatory region 580869	461 bp distal
Rr580870	regulatory region 580870	549 bp distal
Rr580871	regulatory region 580871	457 bp distal
Rr580872	regulatory region 580872	1223 bp proximal
Tssr34451	transcription start site region 34451	1284 bp downstream
Tssr34452	transcription start site region 34452	1308 bp downstream
Tssr34453	transcription start site region 34453	1394 bp downstream
Tssr34454	transcription start site region 34454	1422 bp downstream