rs33108313 SNP Detail

Summary

• ID
  rs33108313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95146434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAGCCA GGGCTACACA
  GAGAAACCCT GTCTCAAAAA AACAAAACAA AAACAAAAAA ACAAAAAGAC AAACAACAAA
  AGACATGGCA TTTGTTCAAG AAGTAACAAG ACATGGTGGT ACACGCCTCT TTTCCTGGCC
  CTTGAGAAGT GCTGGCATCC CTGGCTACAC AGTGAGCTCA TCCTGGAGAC TATTTCAGGC
  K
  GGTGAGATGG CTCCAAGCCT GACAACCTGA ACTTAACCCC TGGAAACCAC ACGGTGGCAT
  GAAAGAACTG TCTCTTACAA GTTGCCCTGT GACCTCCACA CATGCACACA TACAACACAC
  ATGCACACAA ATGTAAGAAA GCCAGGTGGC AGTAGTACGT ACCTTTAATC CCAGCAGAGG
  CAGGAGGATA AGAGTTCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46772474	NES10660484	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33108313					SNP	G	G	G	G	G	G	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772474	NES10660484	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95146434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13505	CpG island 13505	1652 bp proximal
Gm128	predicted gene 128	Intron
Rr580868	regulatory region 580868	1215 bp distal
Rr580869	regulatory region 580869	within coordinates
Rr580870	regulatory region 580870	43 bp proximal
Rr580871	regulatory region 580871	135 bp proximal
Rr580872	regulatory region 580872	1836 bp proximal
Tssr34451	transcription start site region 34451	1897 bp downstream
Tssr34452	transcription start site region 34452	1921 bp downstream