rs33108305 SNP Detail

Summary

• ID
  rs33108305
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95145663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGGGT ACTGGTACAA
  AACCTGGTTT CAGTTGTGTG GCCCTTGTCA CTGCTTTCCC CCTTCCATGA TGGGATTTGA
  ACCTAGTACC TTGTGCATGT GTTAGGAAAG CCCACTGAAC TACACCTCCA GCCCTGATAG
  CTTGTAAAAC TGTTCCTTCA TTTGTCAACA GGGTAAGACC CTATAAGGTG AGGGCAGATC
  S
  AAGTGCCATA TCTGGAGTGA GGCCTCAGAT ATATTGGCTG TTACTGTTAC AAAGAATAAG
  TTGTACTAAT CAGAGATGGA GAGATGGCTC AGTAGGTAAG ATCACTGGCC GCTCTTCTAG
  AGGATCTGTG TTCAGTTCCC AGCACCCACA TGATGGCTCA CACCATCTAT AACAGTTCCA
  GGGAATCCAA CTCCCTTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772465	NES10660538	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33108305					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772465	NES10660538	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95145663 () rs orientation: forward

Symbol	Name	Function Class
Cdc42se1	CDC42 small effector 1	1943 bp downstream
Gm128	predicted gene 128	Intron
Rr580868	regulatory region 580868	444 bp distal
Rr580869	regulatory region 580869	746 bp proximal
Rr580870	regulatory region 580870	814 bp proximal
Rr580871	regulatory region 580871	906 bp proximal