rs33107580 SNP Detail

Summary

• ID
  rs33107580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154912974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA CAGTGCTAAG TGGGCTTATT
  M
  AGAAGGCCAC CTCAGGCTGG AGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46772653	NES10999421	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A
ss321440054	CHEV_4_154202626	CHEVERUD	SCREENING_POP	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33107580					SNP	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772653	NES10999421	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154912974 () rs orientation: forward

Symbol	Name	Function Class
Rr606270	regulatory region 606270	1977 bp distal
Rr606273	regulatory region 606273	868 bp distal
Rr606274	regulatory region 606274	1012 bp proximal