rs33107320 SNP Detail

Summary

• ID
  rs33107320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3445552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCCAT CTGTCTCTCC
  TGGGATCTGT TTCTTTCTCA TTCAAATCAA GTTGGGAGTA AACTGAATTC AGCTGTTTTC
  TCTGCTTTTG TGAGCAAAAA GAGCCATCCC TTCAATTAAG TTTAAAAGGT AGTTAGGCTC
  TGTTAGAATG TGGCTCCTTT GGTGGCTTTC CTGAGTGCAC AAAGCCCCAG CTCTCTGTAA
  R
  CCAGGGTGTG GTGGTAGCAC AAGTGGTGGA GGCTTAGACG AACAGGAGTT CCAAGTGCTT
  CCTTCCTTGG TGCTAGCGAG TTTGAGGCAA TCCTGGGCTA CATGAGACCA GTCTGAAAAA
  CAAACAAACA AACAAACAAA ACCCCAATGT ACTGATAGCA AATACACTGA CTTGCATCAT
  ATCTTGAAAA AAATAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46235523	mCV22562699	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148543614	ENSMUSSNP1821	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33107320					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3445552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Gm64114	predicted gene, 64114			within coordinates
Rr381632	regulatory region 381632			within coordinates
Rr658903	regulatory region 658903			1916 bp distal
Rr658904	regulatory region 658904			476 bp distal