rs33107269 SNP Detail

Summary

• ID
  rs33107269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145814514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGGAGGTGG TAACTTCTCG AGAATGAGTG ATGCAGAGTA CCAGTGAGCC CACTTCCTGA
  ATAGAATGGC TGGGTCAATC AGTCAGTCAC TCAGCTTCCT GAGAGCCTGT GTTCCTCATC
  AAAAAAAATG TCAAAAATCT GGGTTGGAGA GATGGCTCAG AGGTTAAGAA CACTCACTGG
  CTGCTCTTTC AGAGGTCCTG AGTTTAATTA CCAGCAACCA CATGGTGGCT CCCATCTATA
  ATGGGATCTG ATGCCCTCTT CTGGCACATA GATCATATAT GTATGTATAT ATATATATAT
  R
  TATATATATA TATAATACAC AAAATAAATA AATCTTTTTT TAAAATGTCA ACAATCATAC
  AGTAAAATCG CGGTGAGCAT TGCATGAACT TCAGTACCTG GTGCCAATGT CTCAGTGTGC
  TGAGCATTGT TTTGTTTGTA GATCAGGGCA GACTTCATTG AGCTGTTTCC CACCAAACAA
  CCTTTCTTCA CTTCTCCTCT CAGACCAGTC AAGTACTCAG TAAGTGAACT CAAGAGACAG
  TGAAGAGTTT CTCTCTGTCA AGGAGCCCTG AATTTGTGAC TGCTCTCTAA GTTGGAGTTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45238607	mCV22531067	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33107269					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145814514 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr374013	regulatory region 374013	222 bp downstream
Rr566617	regulatory region 566617	1473 bp distal
Rr566618	regulatory region 566618	562 bp distal