rs33107239 SNP Detail

Summary

• ID
  rs33107239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95144801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCAAA CCTTTTTCTC
  AGCCCTACTA ACTTTGGGGT TTATGCGGTA CGTGTGCGTC CCATCACCAT GTGAGAACTG
  GATCTTCACA TAGGCTCTGG GCATTGTTCT CAGGGTACTA GGCAAGTGCA GTGAGCACTC
  TCCTTGCGGA GTCATCTCTC TGGCCTGACC TGGAACTTAG TGTTCATTGT GTGTCCCACT
  R
  AATGTGTATA TGTGTGCAAG TACCCACCAT CCAGGGTGTC GGATCTCCCT CAAGCAGGAG
  TTAGACATGT GGTTGTGAGT GGCTGATGTG TGTGCTGAAA ATTTAACCTG TCCTGCTCTT
  AACCACTGAG CCGTCTTTTC CGTGTACTGA CCTGGCACGG CTGCTCCCTT GGCTCCACCC
  ACCAATCTAT GAGGTATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46772456	NES10660652	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33107239					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772456	NES10660652	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95144801 () rs orientation: forward

Symbol	Name	Function Class
Cdc42se1	CDC42 small effector 1	1081 bp downstream
Gm128	predicted gene 128	Intron
Rr580867	regulatory region 580867	1699 bp distal
Rr580868	regulatory region 580868	72 bp proximal
Rr580869	regulatory region 580869	1608 bp proximal
Rr580870	regulatory region 580870	1676 bp proximal
Rr580871	regulatory region 580871	1768 bp proximal