rs33106697 SNP Detail

Summary

• ID
  rs33106697
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154909848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCTACC CTTCATGCAA
  TCTGCACACA TCTCCTCAGT GCTCACCGCC TCTCCTGCAG GAAAGACACT GGAGACACCA
  GACTCCTCAA GGAACCATCT AGAAACCTGA CCTCCAACCC CAAACATCAG TCATACTCAC
  ATTCCACACA GGCTCTTCTG CCCTGGGAAT CGGACAGGCT CCACCTTCTC ATGACAGATG
  W
  GCTTCCATGC TTTTGGTCCT TTCTGAGTAC CCCAGCCAGA AGTAGGTATC CACACCAGGT
  CATGGGGGTC ATGGTGGGAG AGACCAGCAC CCTCTATCCA AGCTTGTTTC CAGCTTGTTC
  TTCTGCCTGT ATAGGGACAA TAAGGGGGAG TTTTCTACCA GAACACAATC ACCTTGGAAC
  TCTATTCTGA TGGTGACAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772545	NES10999486	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33106697					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772545	NES10999486	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154909848 () rs orientation: forward

Symbol	Name	Function Class
Rr606270	regulatory region 606270	256 bp proximal
Rr606271	regulatory region 606271	559 bp proximal
Rr606272	regulatory region 606272	656 bp proximal
Rr606273	regulatory region 606273	1749 bp proximal