rs33106310 SNP Detail

Summary

• ID
  rs33106310
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155596450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA CCACGCAAAA CATGAAAGGT
  S
  TGAGGGGATT CTGGCCCTGC CTGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45238597	mCV23301448	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss148058405	ENSMUSSNP2036398	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			C
ss320575285	CHEV_2_155580266	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33106310					SNP	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155596450 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12531	CpG island 12531			764 bp distal
Procr	protein C receptor, endothelial			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr568116	regulatory region 568116			1277 bp proximal
Rr568117	regulatory region 568117			1393 bp proximal
Tssr21121	transcription start site region 21121			415 bp upstream
Tssr21122	transcription start site region 21122			454 bp upstream
Tssr21123	transcription start site region 21123			470 bp upstream
Tssr21124	transcription start site region 21124			525 bp upstream