rs33105800 SNP Detail

Summary

• ID
  rs33105800
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154912175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC AATCAGACAC TCAAAAGTCT
  D
  CTCCTCCCGG TTTCAGATAC TGCCC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46772629	NES10999398	PERLEGEN	MM_PANEL2	f	SNP	G			G		A	A	G
ss148106887	ENSMUSSNP5348262	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33105800					SNP	G	T	T	G	T	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772629	NES10999398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154912175 () rs orientation: forward

Symbol	Name	Function Class
Rr606270	regulatory region 606270	1178 bp distal
Rr606271	regulatory region 606271	1747 bp distal
Rr606272	regulatory region 606272	1650 bp distal
Rr606273	regulatory region 606273	69 bp distal
Rr606274	regulatory region 606274	1811 bp proximal