rs33105739 SNP Detail

Summary

• ID
  rs33105739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95184180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGCCTG AGAAGTGCAC
  CTTTGTTCCT AACTCAGCCT AAAATGTAGC CCCACCCCAA AGAGAGAGTT TTTCCTACTC
  AAGTACAAGA TGAGTCACTA GGAATAGGAG CTCACTTACA AACAAAAACA AACAGAAAAC
  AGGCTTTCCT TTCCCCCCTT TCCCTTGCTT ATTTTTGGTT GTTTTCAAGA CATGGTTTTA
  S
  GCCTAGCTCC TTGGTTTTTT GTTTATTTGT TTACTTTTTC CAAGACAGGG TTTCTCCGTG
  TAGCCCTGGC TGTCCTGGAA CTCATTGGGT ACACCTGCCT CTGCCTGGGA TTAAGTGACA
  GGATTAATGG TGTGTGTCAC CAGGTCACCA GTACCAGTCC CTTTCTGGTC TTCTTTTTAC
  ACAGCCCAGG TCTAGGAACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772831	NES10658816	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	G	C	C	C	G	C	C	G	C
ss135510461	ENSMUSSNP2918121	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33105739					SNP	G	G	C	C	C	G	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772831	NES10658816	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95184180 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580884	regulatory region 580884	88 bp proximal